The Study Quran project has a ruinous flaw which is promoted as central to the undertaking – commentary from outside the Quran.
The various sects of Islam have do not attribute their differences to the Quran, but to their own commentary. The commentary is based on sources external to the Quran. These sources known as traditions or Hadith and Sunnah are condemned in the Quran.
The Quran is a fully detailed scripture for religious law. Yes one may comment on the verses, but the comment must be supportable by other verses from the Quran. The source has to be internal rather than external to the Quran. There is a translation which does precisely that.
[Quran 5:101] O you who believe, do not ask about matters which, if revealed to you prematurely, would hurt you. If you ask about them in light of the Quran, they will become obvious to you. GOD has deliberately overlooked them. GOD is Forgiver, Clement.
For any study of a verse, the whole verse should be looked, subsequently verses before and after a particular verse and finally in light of the whole Quran prior to drawing any conclusion.
IN LIGHT OF THE QURAN – FREEDOM OF RELIGION
[2:256] There shall be no compulsion in religion: the right way is now distinct from the wrong way.
IN LIGHT OF THE QURAN – BASIC RULES FOR ALL FIGHTING
[60:8] GOD does not enjoin you from befriending those who do not fight you because of religion, and do not evict you from your homes. You may befriend them and be equitable towards them. GOD loves the equitable.
[60:9] GOD enjoins you only from befriending those who fight you because of religion, evict you from your homes, and band together with others to banish you. You shall not befriend them. Those who befriend them are the transgressors.
[4:74] If you encounter (in war) those who disbelieve, you may strike the necks. If you take them as captives you may set them free or ransom them, until the war ends. Had GOD willed, He could have granted you victory, without war. But He thus tests you by one another. As for those who get killed in the cause of GOD, He will never put their sacrifice to waste.